# setup.py does not list all requirements, and we also unbundle quite a few
# from the externals folder, so we can't only rely on the automatic generator
# here.
# Additionally, requirements.txt seems to be dev requirements, and is not used
# in setup.py for install_requires.

%global modname mne

Name:           python-%{modname}
Version:        0.24.1
Release:        %autorelease
Summary:        Magnetoencephalography (MEG) and Electroencephalography (EEG) data analysis

# Bundled FieldTrip
# https://github.com/fieldtrip/fieldtrip/blob/master/realtime/src/buffer/python/FieldTrip.py
# Not possible to package because it is matlab package with some plugins

License:        BSD
URL:            http://martinos.org/mne/
Source0:        https://github.com/mne-tools/mne-python/archive/v%{version}/%{name}-%{version}.tar.gz
#Source1:        https://s3.amazonaws.com/mne-python/datasets/MNE-sample-data-processed.tar.gz
BuildArch:      noarch
BuildRequires:  python3-devel

%global _description %{expand:
This package is designed for sensor- and source-space analysis of M-EEG data,
including frequency-domain and time-frequency analyses and non-parametric
statistics.}

%description %_description

%package -n python3-%{modname}
Summary:        %{summary}
%{?python_provide:%python_provide python3-%{modname}}
Provides:       bundled(bootstrap)
Provides:       bundled(js-jquery)
Provides:       bundled(js-jquery-ui)
Provides:       bundled(js-d3)
Provides:       bundled(js-mpld3)
Provides:       bundled(python3-FieldTrip)
BuildRequires:  python3-setuptools
BuildRequires:  python3-numpy
BuildRequires:  python3-scipy

# Test deps
BuildRequires:  python3-pytest
BuildRequires:  python3-pytest-cov
BuildRequires:  python3-pytest-mock
BuildRequires:  python3-pytest-xdist
BuildRequires:  python3-pytest-timeout
BuildRequires:  python3-matplotlib
BuildRequires:  python3-pandas
BuildRequires:  python3-h5py
BuildRequires:  python3-decorator
BuildRequires:  python3-pymatreader
BuildRequires:  python3-h5io
BuildRequires:  python3-tempita
BuildRequires:  python3-scikit-learn
BuildRequires:  python3-Traits
BuildRequires:  python3-tqdm
BuildRequires:  python3-nibabel
BuildRequires:  python3-nilearn
BuildRequires:  python3-qt5
BuildRequires:  python3-dipy
BuildRequires:  python3-xlrd
BuildRequires:  python3-nitime

Requires:       python3-matplotlib
Requires:       python3-decorator
Requires:       python3-h5io
Requires:       python3-six
Requires:       python3-tempita
Requires:       python3-tqdm
Requires:       python3-pymatreader
Recommends:     python3-scikit-learn
Recommends:     python3-pandas
Recommends:     python3-patsy
Recommends:     python3-pillow
Recommends:     python3-h5py
Recommends:     python3-statsmodels
Recommends:     python3-Traits

# Should be included by the dep generator as they're mentioned in setup.py
# Requires:       python3-numpy
# Requires:       python3-scipy

%description -n python3-%{modname} %_description

%prep
%autosetup -n %{modname}-python-%{version}

%generate_buildrequires
%pyproject_buildrequires -r

#pushd %{modname}/externals/
  # Remove bundled six, tqdm, decorator, tempita, h5io
  # Save bundled FieldTrip (can't find upstream)
  #rm -rf decorator.py doccer.py pymatreader/ tempita/ h5io/ tqdm/
  # Check that only {FieldTrip,__init__}.py remain
  #[ $(find -maxdepth 1 -mindepth 1 | grep -v FieldTrip.py | grep -v __init__.py | wc -l) -eq 0 ] || exit 1
#popd
# use all six/tqdm/decorator/h5io/pymatreader from system
# fix API change for jdjcal/jcal2jd
find -type f -name '*.py' -exec sed -i \
  -e "s/from mne.externals.six/from six/" \
  -e "s/from \.*externals.six/from six/" \
  -e "s/from mne.externals import six/import six/" \
  -e "s/from \.*externals import six/import six/" \
  -e "s/from \.*externals.decorator/from decorator/" \
  -e "s/from mne.externals.h5io/from h5io/" \
  -e "s/from \.*externals.h5io/from h5io/" \
  -e "s/from \.*externals.tempita/from tempita/" \
  -e "s/from \.*externals.pymatreader/from pymatreader/" \
  -e "s/from mne.externals.pymatreader/from pymatreader/" \
  -e "s/from \.*.externals.tqdm/from tqdm/" \
  -e "s/from mne.externals.tqdm/from tqdm/" \
  -e "s/from \.*externals import tqdm/import tqdm\n        from tqdm import auto/"\
  -e "s/from \.*externals.doccer/from scipy.misc.doccer/" \
  -e "s/jd2jcal(\(.*\))/jd2jcal(\1, 0)[:-1]/" \
  -e "s/(jcal2jd(\(.*\)))/(jcal2jd(\1)[-1])/" \
  {} ';'
sed -i -e "/mne\.externals\.[^']*/d" setup.py

sed -i -e '1{\@^#!/usr/bin/env python@d}' %{modname}/commands/*.py

#cp -p %{SOURCE1} .
#python -c "import mne; mne.datasets.sample.data_path(verbose=True, download=False)"

%build
%pyproject_wheel

%install
%pyproject_install
%pyproject_save_files mne

%check
export MNE_SKIP_TESTING_DATASET_TESTS=true
export MNE_SKIP_NETWORK_TESTS=1
export MNE_DONTWRITE_HOME=true
export MNE_FORCE_SERIAL=true

export PYTHONPATH=%{buildroot}%{python3_sitearch}

# Deselected tests require additional data or don't work in mock
# Two deselected for sklearn warnings
# Tools directory ignored as it contains tests for upstream release process

pytest-%{python3_version}\
 --deselect mne/utils/tests/test_logging.py\
 --deselect mne/tests/test_report.py\
 --deselect mne/beamformer/tests/test_lcmv.py\
 --deselect mne/io/curry/tests/test_curry.py\
 --deselect mne/io/tests/test_meas_info.py\
 --deselect mne/tests/test_chpi.py\
 --deselect mne/viz/tests/test_topomap.py\
 --deselect mne/preprocessing/tests/test_peak_finder.py\
 --deselect mne/io/tests/test_constants.py\
 --deselect mne/datasets/tests/test_datasets.py\
 --ignore tools


%files -n python3-%{modname} -f %{pyproject_files}
%license LICENSE.txt
%doc README.rst examples
%{_bindir}/%{modname}

%changelog
%autochangelog